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LET'S TALK LIFE-SCIENCE CELL BIOLOGY

Suraj Prakash Sharma | Ekta Chotia

CELL CYCLE
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5.4.         Cell Cycle Checkpoints

Cell cycle is a highly regulated sequential process, monitored by a number of checkpoints. Checkpoints controls function to ensure that incomplete or damaged chromosomes are not replicated and that critical stages of cell cycle are completed before the following stages is initiated.

The eukaryotic cell cycle is guarded mainly by three checkpoints:

  1. G1 -S checkpoint
  2. G2 -M checkpoint and
  3. Metaphase/anaphase checkpoint (spindle assembly checkpoint).

5.4.1.     G1 - S Check point or restriction or start checkpoint

DNA is replicated in S phase. The Cell cycle arrests in G1 phase if DNA is damage. DNA damage is because of irradiation with UV light or γ rays or any chemical modification.

Under normal conditions, p53 (transcriptional factor)is extremely unstable, so its level is low in cell but  damage DNA leads to an increase in its concentration. The p53 stimulates the transcription of various genes like p21 (CIP), Mdm and Bax (apoptotic genes). p21 is CKI. It  inhibits CDK and prevents the replication of damaged DNA and arrest the cell in G1 stage. The mdm protein work as E3 ligase for p53. P53 increase the mdm protein expression which in turn degrade p53, thus providing a negative loop. The proteasomal degradation of p53 through polyubiquitination by a ubiquitin ligase Mdm results in low transcription activity of p53, hereby providing a negative loop. In case of extensive DNA damage, p53 induces cell death by activating genes (Bax, Fas) that are involved in apoptotic signaling.

Different protein kinase like ataxia-telangiectasia-mutated(ATM), ataxia and rad3 related(ATR) detects DNA damage. These kinases phosphorylates p53, thereby increases the transcription of p21 resulting in blocking the cell cycle at the G1 /S checkpoint.

In G1–S transition, the all mitochondria of a cell fused to form a giant, single tubular network. This network is electrically coupled and the membrane potential (ψm) of mitochondria is hyper polarized. Thus allowing generation of more energy during cell division.

The G1 – S checkpoint is controlled by many different stimuli including (1)  DNA damage (2) TGFβ (3) Contact inhibition (4) Replicative senescence, and 5. Growth factor withdrawal.

TGF-beta1

Transforming growth factor beta (TGF-β) controls proliferation and cellular differentiation in cells. TGF-beta acts as an antiproliferative factor in normal epithelial cells. TGF-β is a secreted protein that exists in three isoforms called TGF-β1, TGF-β2 and TGF-β3.

TGFβ prevents phosphorylation of RB scheduled in mid to late G1 and arrests cells in late G1. TGF β activates SMAD proteins and SMAD activates CKI.

When TGF-beta1 binds to a TGF receptor and activates SMAD3-SMAD4. SMAD activates cyclin-dependent kinase inhibitors (p16, p15, p21, p27). TGF β additionally inhibits the transcription of Cdc25A, a phosphatase that activates the cell cycle kinases. For this reason cell cycle kinases (CDK2, CDK4, CDK6) bound to Cyclin E, and Cyclin D cannot phosphorylate pRb. Cdc 25A is a phosphatase that activates CDK.

5.4.2.     DNA Damage

The p53 is inactive in normal cell and it is bound to MDM2 protein. MDM2 is a E3 ligase which degrades the P53. The P53 is activated by UV, oncogenes and drugs or other substances that damage DNA.

Damage of DNA activates ATM, Chk1 and Chk2. Which phosphorylate p53 and prevent the binding of p53 with MDM2. Once activated P53 work as transcription factor for P21.which binds the complex G1-S/CDK and D / CDK (molecules important for the transition from G1 to S phase) by inhibiting their activity ( and avoiding the proliferation of mutated cells). p53also inhibits  angiogenesis (formation of new blood vessel).

Activation of proliferation : many grow factors are involved in proliferation like

IGF1 and FGF2

Insulin Growth Factor-I and Fibroblast Growth Factor-2 both enhance cyclin D1 and cyclin E-cdk2 association. This activity help in G1 progression. IGF-I was required for G(2)/M progression. FGF-2 also decrease the levels of the cdk inhibitor p27(Kip1) associated with cyclin E-cdk2.

PDGF

PDGF induces the formation of cyclinD-cdk4 complexes. This complexes binds with P27. PDGF also reduce the level of free P27.

pRb (Retinoblastoma Protein)

The retinoblastoma protein is a tumor suppression protein. Rb is expressed throughtout the cell cycle but it is phosphotylated during the G1/S transition.RB play a  role in G1 arrest when the DNA is damage. Rb play a role in G1 arrest.

The unphosphortlated form of RB is Antiproliferatic. Its inhibits the transcription of genes that are required for cell cycle progression, e.g., cyclin A.

Rb binds with E2F family of proteins. The transcription activating complexes of E2 promoter-binding–protein-dimerization partners (E2F-DP) can push a cell into S phase. As long as E2F-DP is inactivated, the cell remains stalled in the G1 phase. When pRb is bound to E2F, the complex acts as a growth suppressor and prevents progression through the cell cycle. The pRb-E2F/DP complex also attracts a histone deacetylase (HDAC) protein to the chromatin. Because histone deacetylase modifies chromatin to a closed state through deacetylation, transcription is repressed. The antimitogenic activity of TGFb also requires RB activation.

When a quiescent cells are stimulated to enter the cell cycle, Cdk4/6-cyclin D complexes become active in mid-G1 and initiate the phosphorylation of RB. Later in G1, RB becomes hyperphosphorylated through the combined actions of Cdk4-cyclin D, Cdk2-cyclin E, and Cdk2-cyclin A. The activities of Cdk2-cyclin E and Cdk2-cyclin A are both rate limiting and required for entry into S phase. Phosphorylation of RB is maintained throughout S and G2, until RB is finally dephosphorylated by a phosphatase at the M/G1 transition.

Phosphorylation of pRb allows E2F-DP to dissociate from pRb and become active. When E2F is free it activates factors like cyclins (e.g. Cyclin E and A), which push the cell through the cell cycle by activating cyclin-dependent kinases, and a molecule called proliferating cell nuclear antigen, or PCNA, which speeds DNA replication and repair by helping to attach polymerase to DNA.

The amplification or overexpression of cyclin D and Cdk4/6, or loss of the Cdk4/6 inhibitor P16INK4a causes increased RB phosphorylation and inactivation of RB function and this leads to tumors.

Phosphorylation Site-Mutated RB proteins (PSM – RB)

Phosphorylation Site-Mutated RB proteins are those mutant form of RB which cannot be phosphotylated by Cdk. These PSM – RB remains in bound form with E2F and block the cell cycle. These (PSM-RB) cause a cell cycle arrest in G1.

5.4.3.     G2 -M checkpoint

Prevents the mitotic entry in response to DNA damage. DNA damage induces the ATM/ATR pathway which activates the Chk1 and Chk2 kinases. Chk1/2 phosphorylates Cdc25 inhibiting its activity and promotes its binding to 14-3-3 proteins to sequester it in the cytoplasm. p53 also activates p21, and both p21 and 14-3-3 proteins further inhibit CDK1-cyclin B complex by phosphorylation and sequestering cdc2 in the cytoplasm. p53 is also involved in the dissociation of CDK1-cyclin B complexes by induction of Gadd45 (growth damage and DNA damage inducible gene).

5.4.4.     Spindle fibre checkpoint

Proper chromosome segregation is crucial to maintain genomic integrity. The spindle is made up of a bipolar array of microtubules (MTs) extending from opposing spindle poles to chromosomes at the spindle equator. Microtubules are polar polymers with the “minus” ends located at spindle poles and “plus” ends free to attach to chromosomes. Chromosomes are connected to spindle microtubules via kinetochores.

Spindle fibre checkpoint examines improper alignment of the chromosome on the mitotic spindle via kinetochores and thereby determines whether to execute or delay chromosome segregation. The major components involved in spindle checkpoint are Mad1/2/3 (mitotic arrest deficient), (Budding Inhibited by Benzimidazole) (Bub1/2) respectively. These proteins are activated when improper attachment of microtubule occurs and inhibit the Cdc20 subunit of the anaphase-promoting complex (APC) and as a result metaphase anaphase transition is prevented.

5.5.         Anaphase promoting complex (APC)

Anaphase Promoting Complex is a multisubunit E3 ubiquitin ligase that plays a critical role in cell cycle by inducing proteolysis of different cell cycle regulators. APC or cyclosome is a large protein complex with 12-13 core components that remain stably associated. Multisubunit complex includes SCF and several SCF-like complexes containing a RING (APC11)subunit, a cullin (APC2) subunit.

The major function of APC is to induce transition from metaphase to anaphase by tagging specific proteins for proteolysis. Securin and S and M cyclins are the two basic proteins that gets degraded as substrates of APC/C. During metaphase, cohesin mediates the binding of the sister chromatids together. But when securin undergoes ubiquitination, releases separase which further triggers the degradation of cohesin. This makes the sister chromatids free to move to opposite poles for the onset of anaphase stage. The  APC/C also degrades the mitotic cyclins, resulting in the inactivation of M-Cdk complexes and thus promoting exit from mitosis and cytokinesis.

5.5.1.     Regulation of sister Chromatid separation by the APC

Proteolysis of securin mediated by APC-C CdC-20 at metaphase liberates separase, a protease that cleaves the SCC1 cohesion subunit responsible for sister chromatid cohesion. APC-C CdC-20 also initiates cyclin B degradation in mitosis, which is important for activation of separase. Activation of APC-C CdC-20 is controlled by Emi1 and the spindle checkpoint. Securin degradation not only promotes sister chromatid separation but also releases the phosphatase Cdc14 from the nucleolus. The Cdc14 protein is part of a complex mitotic exit network. Release of Cdc14 leads to dephosphorylation and activation of Cdh1. Activated APC-C Cdh–1 finally degrades mitotic cyclin. Further at the M to G1 transition and maintains their low state of activity during G1

APC–C consists of a catalytic core which includes the cullin subunit Apc2 and RING H2 domain subunit Apc11. The domain of Apc2 forms a tight complex with Apc11,and mediates the ubiquitylation of substrates. The other core proteins providing molecular scaffold support includes Apc1, largest subunit and Ap). APC–C substrates have recognition amino acid i.e. can have D-box sequence (RXXLXXXXN) or KEN-box sequence (KENXXXN)  that enable the APC/C to identify them where R represents arginine, L is leucine, N is asparagine, K is  lysine, E is glutamate and X is any amino acid.

5.5.2.     Regulation of APC activity

The APC is active from mitosis until the end of G1.The affinity of activators of the APC is regulated by phosphorylation of APC subunits. Cdc20 activity is regulated by transcription and APC-C Cdh–1 dependent degradation leading to APC-C Cdh–20 activity from early mitosis until the M to G1 transition . Cdk1 and MAPK can phosphorylate Cdc20; although it is controversial whether phosphorylation of Cdc20 is necessary for APC activation in human cells, it is required for its inhibition by the spindle checkpoint

Initially it has been reported that the protein level of Cdh1 remains relatively constant throughout the cell cycle) and Cdh1 is activated by dephosphorylation from the M to G1 transition until the end of the G1 phase. However, there are also reports that Cdh1 levels oscillate during the cell cycle at least in human cells. The subcellular localization of Cdh1 is cell cycle regulated and Cdh1 is nuclear during G1 and in the cytoplasm between S phase and the end of mitosis. Cdk-dependent phosphorylation leads to efficient inactivation of Cdh1 by nuclear export  and prevention of APC binding, thus restricting APCCdh1 activity to the points in the cell cycle when Cdk activity is low.

Phosphorylation of core APC subunits upon entry into mitosis by Cdk1/cyclin B and polo protein kinases Plk/Cdc5/Plo1 enhances Cdc20–APC interaction. One or more subunits (Apc1, Cdc27, Cdc16 and Cdc23are phosphorylated during mitosis ) and dephosphorylation can inactivate the mitotic APC. Dephosphorylation of Cdk1-phosphorylation sites of the APC may inactivate the mitotic APCCdc20 by dissociation of Cdc20, and Cdh1 then replaces Cdc20, leading to degradation of Cdc20 during mitotic exit and G1. On the other hand, protein kinase A (PKA)-mediated phosphorylation of core APC subunits can also inhibit APC activityand dephosphorylation of PKA phosphorylation sites, possibly by the phosphatases (PPs) PP1 or PP2A increases APC activity and Cdc20 binding. Therefore, the phosphorylation of some subunits may have activating effects, whereas the phosphorylation of other subunits may have inhibitory effects. However, the precise nature of these phosphorylation/dephosphorylation events and how they affect APC regulation still remains to be elucidated in more detail.

5.6.         Metaphase to anaphase transition:

Model of the regulation of mitosis and G1 by APC-dependent cyclin proteolysis. The first phase of cyclin B1/Clb2 proteolysis by APCCdc20 mediates spindle disassembly and cytokinesis. APCCdc20-dependent degradation of cyclin A2/Clb5 leads to activation of Cdh1 and in yeast of the CKI Sic1 downregulating mitotic kinase activity in G1. Whether there is any role of human CKIs such as p21 or p27 in this context has to be defined. APCCdh1 inactivates cyclin B1/Clb2 further during mitotic exit and the G1 phase of the cell cycle to regulate cell growth and the length of G1 allowing cell differentiation and correct assembly of pre-RCs at origins of replication and subsequent complete and accurate DNA replication

Metaphase Cyclin A is degraded and at the termination of mitosis Cyclin B is degraded.

Regulation of cell cycle progression by APC/C-dependent proteolysis. (A) Sister chromatid separation and Cdk1 inactivation both depend on APC/CCdc20. Activation of APC/CCdc20 but not APC/CCdh1 requires phosphorylation of core subunits by Cdk1–cyclin B. APC/CCdc20 mediates sister chromatid separation and Cdk1 inactivation by degrading securins and B-type cyclins, respectively. APC/CCdc20also creates the conditions that keep Cdk1–cyclin B complexes inactive during the ensuing G1 phase. Cdk1 inactivation by APC/CCdc20 permits release from its inhibitor of the Cdc14 phosphatase which, by dephosphorylating Sic1 and Cdh1, causes accumulation of a CKI and activation of APC/CCdh1. Broken lines indicate proteolysis and P in a circle indicates phosphorylation. (B) Changes in the abundance and activity of CDKs, the securin Pds1, the CKI Sic1, and both forms of the APC/C during the cell cycle.

Anaphase is the stage of mitosis or meiosis when chromosomes are split and the sister chromatids move to opposite poles of the cell. During metaphase, APC/C is inhibited until all the sister kinetochores are attached to opposite poles of the  mitotic spindle. When all the kinetochores are properly attached, APC/C becomes active and promotes binding to cdc20. M cyclins and securin are then targeted for degradation through ubiqutylation by APC/Ccdc20 leading to the onset of anaphase stage. Pds1p control the transition from  Metaphase to anaphase.CDC20 is required to degrade the pds1p.

5.7.         M to G1 transition :

After the completion  of mitosis,  the entry into another round of mitosis is prevented by inhibiting Cdk activity. During the transition from metaphase to anaphase, Cdh1 is phosphorylated by M-Cdk and thus prevent it from attaching to APC/C. As the M-Cdk is degraded in later stage of mitosis, cdc20 gets released and Cdh1 can bind to APC/C, thus keeping it activated for the M/  G1transition. Cdh1 is necessary for APC to degrade the Cyclin B. Degradation of Cyclin B is mark of exit of Mitosis.

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